User Guider MATLAB Package for Gene Selection
نویسنده
چکیده
We have developed a package which can effectively evaluate gene function in discriminating biological samples of different types. Sixteen gene selection algorithms are included in this package. We write eight of them in MATLAB, and also provide MATLAB interface for a popular software rankgene1.1 which integrates other eight typical methods. Additionally, a MATLAB interface for two well-known classification softwares such as LIBSVM and WEKA are also included, and used for confirmation of the performance of gene selection algorithms by observing classification accuracy. All of these features make this package a useful tool in gene expression analysis and feature selection.
منابع مشابه
LIBGS: A MATLAB software package for gene selection
Many gene selection algorithms have been applied in gene expression data analysis successfully. To solve different developing environments of these toolkits, such as rankgene (Su et al., 2003), and mRMR (http://research.janelia.org/peng/proj/mrmr/index.htm), perform data analysis and make algorithm comparison more flexible, we have developed a software package LIBGS including: 1) Seven new gene...
متن کاملDynamic Simulation of n-R Planar Manipulators
In the paper a simulation package for dynamic simulation of n-DOF planar manipulators with revolute joints is presented. Numerical effective equations to solve the direct kinematics of nDOF manipulator are developed. The dynamic model based on Lagrangian equation is derived. The simulation package is implemented in MATLAB. It consists of several M-files for the calculation of the model, utility...
متن کاملDistribution Systems Reliability Analysis Package Using Matlab Graphical User Interface (gui)
This paper presents a software package whose aim is to provide a tool to be used for reliability indices analysis in radial distribution system. It contains all the main elements found in practical system. The software package employs the Graphical User Interface (GUI) capabilities of Matlab. The main advantage of the proposed package is that the reliability indices analysis can find in differe...
متن کاملEXCLUVIS: A MATLAB GUI Software for Comparative Study of Clustering and Visualization of Gene Expression Data
The result of one clustering algorithm varies from that of another for the same input dataset as the input parameters of an algorithms can substantially affect the behavior and execution of the algorithms. Cluster validity measures can be used to find the partitioning that best fits the underlying data. In most realistic applications, this analysis can be visualized using simple Computer-Aided-...
متن کاملAn Off-line Simulation Package for Robotics Education and Industrial Purposes
In this paper, a novel off-line robot simulation package is developed for the industrial robot manipulators. The package allows interactive simulation of fundamental robot manipulators classified by Huang and Milenkovic [1]. The new package using Matlab Graphical User Interface (GUI) commands provides an interactive environment for serial-link robot manipulators. In the new package, there are s...
متن کامل